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Challenges and Approaches for Distributed Workflow-Driven Analysis of Large-Scale Biological Data [Vision Paper] ⇤ Ilkay Altintas, Jianwu Wang, and
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Document Date: 2012-03-19 16:25:44

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File Size: 487,82 KB

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Hadoop / New York / Washington / DC / Stratosphere / Berlin / Portland / Phoenix / London / /

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Amazon / Future Generation Computer Systems / Oxford University Press / CAMERA Genbank / IEEE Press / CoGroup / P. Greenfield A. S. / /

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Germany / United States / United Kingdom / Greece / /

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M&A / /

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Daniel Crawl San Diego Supercomputer Center University of California / R. Plant / Biological Systems University of California / /

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scientific products / web-scale analytical processing / optimized processing / bioinformatic tools / domain-specific data-intensive applications / data-intensive computing promise new capabilities / scientific tools / parallelization solutions / distributed computing / architecture facilitating data-intensive applications / data-intensive computing / distributed data-parallel bioinformatics tools / bioinformatics algorithms / computational tools / distributed computing methods / bioinformatics tool / workflow systems / data-intensive computing resources / semi-automated computational solutions / generation sequencing technologies / process products / parallel data processing / data processing / scientific workflow systems / large scale distributed computing / biological tools / scientific grid workflow applications / scientific end products / grid computing / bioinformatics tools / computing / cloud computing / bioinformatics applications / distributed and parallel processing capabilities / ad-hoc network / Web Services / /

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Betty Moore Foundation / National Science Foundation / USA Weizhong Li Center for Research / Congress / Oxford University / IEEE Computer Society / University of California / San Diego / /

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O. Kao / V / H. Lu / V / Daniel Crawl San Diego / /

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actor / Kepler Data-Parallel Execution Patterns Map-Reduce All-Pairs Master-Slave bioKepler BLAST HMMER CD-HIT Assembly Executable Workflow Plan Run Manager / particular actor / Report Designer / General / Hadoop Director / Corresponding author / director for Kepler / generic higher-order actor / Run Manager / bioKepler Scheduler / Stratosphere Director / Director / Contingency actor / MasterSlave actor / Manager Search Tag Workflow Bioinformatician Customize & Integrate Reporting Report Designer / data-parallel director for their workflows / Scheduler / / /

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Kepler / /

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Java / DC / /

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Journal of Molecular Biology / Journal of Physics /

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genomics / bioinformatics / Biotechnology / API / third generation sequencing technologies / bioinformatics algorithms / PDF / RMAP readmapping algorithm / Java / DNA sequencing / peer to peer / CloudBurst algorithm / parallel processing / GUI / /

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