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Codon
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111	Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus Joshua B. Plotkin†‡§ and Jonathan Dushoff† Institute for Advanced Study, Olden Lane, Princeton, NJ 08540; and †De Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2003-06-12 18:05:40 Gene expression Protein biosynthesis Mutation Molecular genetics Codon usage bias Genetic code Synonymous substitution Silent mutation Stop codon Biology Biochemistry Molecular biology
112	J Mol Evol[removed]:635–653 DOI: [removed]s00239[removed]x Codon Usage and Selection on Proteins Joshua B. Plotkin,1 Jonathan Dushoﬀ,2 Michael M. Desai,3 Hunter B. Fraser4 1 Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2006-11-27 14:54:22 Molecular biology Protein biosynthesis Molecular genetics Mutation Codon usage bias Genetic code Synonymous substitution Stop codon Amino acid Biology Biochemistry Gene expression
113	Synonymous but not the same: the causes and consequences of codon bias Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2010-12-20 09:24:08 Protein biosynthesis Molecular biology Molecular genetics RNA Codon usage bias Codon Adaptation Index Genetic code Translation Start codon Biology Biochemistry Gene expression
114	LETTERS Estimating Selection Pressures from Limited Comparative Data Joshua B. Plotkin,* Jonathan Dushoff, Michael M. Desai,à and Hunter B. Fraser§ Department of Biology, University of Pennsylvania; Department of Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English* - Date: 2006-07-13 13:43:12 Gene expression Molecular evolution Genetics Protein biosynthesis Ka/Ks ratio Codon usage bias Genetic code Gene Nonsynonymous substitution Biology Biochemistry Molecular biology
115	Proc. R. Soc. B[removed], 2455–2464 doi:[removed]rspb[removed]Published online 22 July 2008 Directionality in the evolution of influenza A haemagglutinin Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2008-10-07 10:39:54 Gene expression Bioinformatics Computational phylogenetics Ka/Ks ratio Nonsynonymous substitution Synonymous substitution Codon usage bias Substitution model Genetic code Biology Molecular biology Molecular evolution
116	Tissue-specific codon usage and the expression of human genes Joshua B. Plotkin†‡, Harlan Robins†§, and Arnold J. Levine§ Harvard Society of Fellows and Bauer Center for Genomics Research, Harvard University, 7 Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2004-08-16 20:10:46 Molecular biology Protein biosynthesis Genetics Molecular genetics Codon usage bias Genetic code Gene Ridge Translation Biology Biochemistry Gene expression
117	brief communications arising Evolutionary genomics Codon bias and selection on single genomes Arising from: J. B. Plotkin, J. Dushoff & H. B. Fraser Nature 428, 942–[removed]) Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2005-01-19 15:57:40 Gene expression Protein biosynthesis Genetics Mutation Codon usage bias Codon Adaptation Index Genetic code Ka/Ks ratio Synonymous substitution Biology Biochemistry Molecular biology
118	Coding-Sequence Determinants of Gene Expression in Escherichia coli Grzegorz Kudla, et al. Science 324, [removed]); DOI: [removed]science[removed]The following resources related to this article are available online at Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2009-05-06 16:26:18 Gene expression Protein biosynthesis Molecular genetics Genetics Codon usage bias Green fluorescent protein Codon Adaptation Index Messenger RNA Translation Biology Biochemistry Molecular biology
119	RESEARCH PAPER RESEARCH PAPER This manuscript has been published online, prior to printing. Once the issue is complete and page numbers have been assigned, the citation will change accordingly. Add to Reading List Source URL: snpeff.sourceforge.net Language: English - Date: 2013-03-14 14:54:14 Molecular biology DNA Molecular genetics Single-nucleotide polymorphism Human genome Genetic code Start codon Sobp Messenger RNA Biology Genetics Gene expression
120	The graph shows the genetic distance of proteins between the two species. Genes in the same location (green) are generally less than 0.5 distant. The inset shows the novel Add to Reading List Source URL: helix.biology.mcmaster.ca Language: English - Date: 2002-05-10 12:43:23 Codon usage bias Gene Escherichia coli Ridge Biology Molecular biology Gene expression

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