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Protein structure / Parallel computing / Molecular modelling / Computational chemistry / Molecular dynamics / Protein folding / Task parallelism / CHARMM / Folding@home / Computing / Concurrent computing / Chemistry


Combining Task- and Data Parallelism to Speed up Protein Folding on a Desktop Grid Platform Is efficient protein folding possible with CHARMM on the United Devices MetaProcessor? 1
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Document Date: 2002-11-08 12:09:28


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City

San Francisco / Fort Lauderdale / Zurich / /

Company

SCore Cluster System Software / United Devices Inc. / NPACI Resources / Existing Systems / 1GHz / 600MHz / 500MHz / 933MHz / /

Country

Switzerland / /

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Facility

Stanford University / Square Deviation / Biochemistry University / /

IndustryTerm

software system / cost-demanding technologies / search process / server software / free energy / search path / parallel computing environments / communication systems / distributed computing / potential energy surfaces / breadth-first search / parallel computing platform / isolated processors / partial search tree / possible solutions / natural computing paradigm / parallel systems / quantum chemical calculations / exhaustive search / aqueous solution / search algorithm / online work-unit / distributed systems / distributed computing platform / well-mapped and well-known campus computing infrastructure / well guided search procedure / approximate numerical solution / computational systems / distributed computing infrastructure / student computing rooms / regular Internet-style / depth-first search / potential energy / software environment / agent software / web-based interface / resource discovery protocol / search tree / computing / protein folding algorithm / nodes using message passing systems / search trough / network technologies / search space / breadthfirst search / well suitable computing paradigm / macromolecular energy / linear search / achieved using more cost-demanding technologies / /

OperatingSystem

UNIX / Linux / /

Organization

Biochemistry University of Zurich CH-8057 Zurich / T. Stricker1 Department of Computer Science ETH Zurich CH-8092 Zurich / Carnegie Mellon School of Computer Science / Stanford University / Institute for Comutersystems / /

Person

B. D. Olafson / /

Position

D. J. / MP / clustered worker / isolated / independent worker / respective clustered worker / implicit solvent model for Molecular Dynamics Simulations / SMP worker / candidate for the united devices metaprocessor / isolated worker / controller / /

Product

United Devices MetaProcessor / MetaProcessor Platform / MP platform / MP / /

ProvinceOrState

Florida / California / /

PublishedMedium

Journal of Molecular Biology / Physical Review Letters / /

SportsLeague

Stanford University / /

Technology

molecular modeling / Fast Ethernet / x-ray / 3-D / search algorithm / 42 processors / Linux / UNIX / Antibodies / API / cost-demanding technologies / computational chemistry / simulation system / shared memory / operating systems / TCP/IP / protein folding algorithm / Ethernet / network technologies / Verlet algorithm / resource discovery protocol / spectroscopy / simulation / Gigabit Ethernet / /

URL

http /

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