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Chapter 7 The Virtual Laboratory: Enabling Drug Design on the Grid This chapter presents the design and development of a virtual laboratory environment that enables molecular modelling for drug design on geographically
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Document Date: 2004-02-17 00:02:08


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Company

Chapter 7 The Virtual Laboratory / The Virtual Laboratory / Compaq / Nimrod-G Grid / /

Currency

USD / /

Facility

Software Stack The Virtual Laboratory / University of California / /

IndustryTerm

active site / large chemical databases / performance computing / scientific applications / molecular / remote chemical databases / target chemical database / suitable site / molecule server / laboratory tools / online creation / data intensive computing / chemical_definition_file chemical_score_file flex_definition_file flex_drive_file ligand_contact_file ligand_chemical_file ligand_energy_file / process server / score_ligand minimize_ligand multiple_ligands random_seed anchor_search torsion_drive clash_overlap conformation_cutoff_factor torsion_minimize match_receptor_sites random_search / chemical database / scientific and commercial applications / local resource management systems / pharmaceutical / entity using resource management systems / molecular docking applications / runtime machinery / energy / parameter sweep applications using tools / chemical and geometric complementarities / parallel applications / Internet-wide / replica site / cost optimization scheduling algorithms / data intensive applications / receptor site / high-energy physics events processing / chemical entity / chemical database server / parameter sweep applications / job management / computing / job generation tool / chemical / energy-based scores / massive network / chemical databases / parameter anchor_search text default / resource broker / chemicals / macromolecular binding site / screening millions of compounds in chemical databases / /

MarketIndex

CDB / /

OperatingSystem

Linux / IRIX / Microsoft Windows / /

Organization

Data Movement / CDB Service on Grid Compute Node Figure / University of California in San Francisco / /

Person

GRACE CORE MIDDLEWARE FABRIC CDB / Dat / Grid Scheduler Grid / /

Position

site resource manager / broker / resource broker for processing jobs on Grid resources / drug designer / Nimrod-G broker for scheduling jobs on distributed resources / resource broker / process server / scheduler / Manager Nimrod Agent Do / / Nimrod-G broker / Nimrod-G resource broker / /

Product

Relenza / /

ProvinceOrState

California / /

Technology

Alpha / X-ray / peer-to-peer / Linux / computational chemistry / operating system / cost optimization scheduling algorithms / Drug Discovery / existing Grid technologies / Grid technologies / ASCII / HPC technologies / Drug Design / GUI / /

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