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51	WORKED EXAMPLE – BROWSER (e76) ______________________________________________________________ In this worked example we will explore the human ABCD1 (ATP-binding cassette, sub-family D (ALD), member 1) gene. The prot Add to Reading List Source URL: ftp.ebi.ac.uk Language: English - Date: 2018-03-06 08:48:58
52	Follow these instructions to guide you through BioMart to answer the following query: You have three questions about a set of human variants: HBS1L:NM_006620.3:c.130C>T, rs267606641, rs11154851 1) Find the source and a Add to Reading List Source URL: ftp.ebi.ac.uk Language: English - Date: 2018-03-06 08:48:56
53	Exercise - Orthologues, paralogues and gene trees for the sup45 gene in yeast. a) How many orthologues are predicted for this gene in Ensembl Fungi? Let’s have a closer look at the orthologues in Schizosacchmomycetale Add to Reading List Source URL: ftp.ebi.ac.uk - Date: 2018-03-06 08:50:01
54	How heavy is 1 kg of information? A very short introduction to information theory Dr. Jossy Sayir, Dept of Engineering and EBI About the speaker… Add to Reading List Source URL: www-sigproc.eng.cam.ac.uk Language: English - Date: 2015-11-15 06:17:56
55	Exercise – Ensembl Fungi: export sequences in FASTA format Retrieve the fasta sequences of all genes in Schistosoma mansoni located on chromosome 5 that are protein coding and contain transmembrane domains only. Do a Add to Reading List Source URL: ftp.ebi.ac.uk - Date: 2018-03-06 08:50:02
56	Exercise The phytopathogenic fungus Alternaria alternata f. sp. lycopersici (AAL) produces toxins that are essential for pathogenicity of the fungus on tomato (Solanum lycopersicum). AAL toxins and fumonisins of the un Add to Reading List Source URL: ftp.ebi.ac.uk Language: English - Date: 2018-03-06 08:50:00
57	European Genome-phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD Add to Reading List Source URL: www.ebi.ac.uk Language: English - Date: 2016-07-20 06:39:46
58	Exercise – Export sequences in FASTA format Retrieve the sequences of all chicken genes (Gallus gallus) that are located on chromosome 20, that are protein coding and that encode for proteins containing transmembrane Add to Reading List Source URL: ftp.ebi.ac.uk Language: English - Date: 2018-03-06 08:50:00
59	Exercise You have carried out SNP-calling analysis on a region on chromosome 21. Use the file test_chr21.vcf, which can be found at the URL on the front of the book. (a)  Find the variant predicted to be probably da Add to Reading List Source URL: ftp.ebi.ac.uk - Date: 2018-03-06 08:50:02
60	Exercise (a) Find the gene fdh in Staphylococcus aureus subsp. aureus N315. How many orthologues does it have? (b) Find the human orthologue. What is the target %id and the query %id? Why are these different? Add to Reading List Source URL: ftp.ebi.ac.uk Language: English - Date: 2018-03-06 08:50:02