EBI

Results: 595



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71

Exercise – Ensembl Fungi: variation data in the S. cerevisiae mitochondrial genome Retrieve the variation ID, chromosome name, position in bp and alleles for all sequence variants in the mtDNA. Export the results as a

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Source URL: ftp.ebi.ac.uk

- Date: 2018-03-06 08:50:01
    72

    Exercise – Plasmodium falciparum and SNPs Go to Ensembl Protists and search for glucose-6-phosphate 1-dehydrogenase. Filter the results for Plasmodium falciparum only. a) How is this gene named in Ensembl Protists?

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    Source URL: ftp.ebi.ac.uk

    - Date: 2018-03-06 08:50:02
      73

      ENSEMBL PLANTS: BROWSER WALKTHROUGH The Arabidopsis floral homeotic gene APETALA1 (AP1) encodes a putative transcription factor that acts locally to specify the identity of the floral meristem and to determine sepal and

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      Source URL: ftp.ebi.ac.uk

      Language: English - Date: 2018-03-06 08:48:59
        74

            PDBeFold  (SSM:  Secondary  Structure  Matching)   http://pdbe.org/fold/    

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        Source URL: www.ebi.ac.uk

        Language: English - Date: 2010-09-22 08:35:47
          75

          Exercise – Variant Effect Predictor An analysis of 5,000 patients from a London cohort has identified few variants associated with lung cancer: chr 15, genomic coordinate, alleles G/A, forward strand chr 22,

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          Source URL: ftp.ebi.ac.uk

          Language: English - Date: 2018-03-06 08:50:02
            76

            ENSEMBL FUNGI: BROWSER WALKTHROUGH We will explore the sir2 gene, which seems to play a role in longevity determination. Deletion of sir2 shortens replicative life span, whereas overexpression increases replicative life

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            Source URL: ftp.ebi.ac.uk

            Language: English - Date: 2018-03-06 08:49:00
              77

              Exercise (a) Go to the region from bp 2,533,290 to 2,562,211 on turkey chromosome 2. How many contigs make up this portion of the assembly (contigs are contiguous stretches of DNA sequence that have been assembled solely

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              Source URL: ftp.ebi.ac.uk

              Language: English - Date: 2018-03-06 08:50:02
                78

                PDF Document

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                Source URL: wasserchemie.ebi.kit.edu

                - Date: 2017-02-27 14:48:42
                  79

                  Exercise – Exploring sequence variant annotation in human The NPC1 (Niemann-Pick disease, type C1) gene encodes a protein that is thought to be involved in the intracellular transport of cholesterol. One of the varian

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                  Source URL: ftp.ebi.ac.uk

                  Language: English - Date: 2018-03-06 08:50:02
                    80

                    Exercise - Using your own data: transcriptome in E. coli This directory contains BigWig format files with the extension .bw which contain RNAseq data aligned to the E. coli genome. ftp://ftp.ensemblgenomes.org/pub/misc

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                    Source URL: ftp.ebi.ac.uk

                    - Date: 2018-03-06 08:50:02
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