Workflow for ChIP-seq - Gene chip analysis - Document - PDFSEARCH.IO

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Date: 2013-02-11 17:31:18 Molecular biology Gene expression Biological databases Protein methods Chip-sequencing RNA-Seq FASTA format TRANSFAC FASTQ format Biology Bioinformatics Biochemistry		Workflow for ChIP-seq & RNA-seq data analysis, GRS 2012 4 WORKFLOW FOR ANALYSIS OF CHIP-SEQ DATA INCLUDING ANALYSIS OF ENRICHED TRANCRIPTION FACTOR BINDING SITES -Gavin Schnitzler[removed]QUALITY CONTROL ON SEQUE Add to Reading List Source URL: sites.tufts.edu Download Document from Source Website File Size: 162,50 KB Share Document on Facebook

	Exercise – Ensembl Fungi: export sequences in FASTA format Retrieve the fasta sequences of all genes in Schistosoma mansoni located on chromosome 5 that are protein coding and contain transmembrane domains only. Do a DocID: 1vbN9 - View Document
	Exercise – Export sequences in FASTA format Retrieve the sequences of all chicken genes (Gallus gallus) that are located on chromosome 20, that are protein coding and that encode for proteins containing transmembrane DocID: 1v4pE - View Document
	Exercise 1 – Export sequences in FASTA format Retrieve the fasta sequences of all wheat genes that have an EntrezGene ID, that are protein coding and signal peptide domains. Do a count after selection of each filter t DocID: 1uLeX - View Document
	This part is optional. The input file is in the common FASTA format, except that an expression ratio or ChIP-chip score appended to each header line, as shown below. DocID: 1rj1B - View Document
	INPUT / OUTPUT Less stringent 1. EXTRACT DATA SFF file DocID: 1qBSX - View Document