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Bioinformatics / Workflow / Galaxy / Chip-sequencing / Geneious / RNA-Seq / Bioinformatics workflow management systems / Scientific workflow system / Workflow technology / Biology / Science


Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses Olga Golosova1 , Ross Henderson2 , Yuriy Vaskin1 , Andrei Gabrielian2 , German Grekhov1 , Vijayaraj Nagarajan2 , Andrew J.
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Document Date: 2014-10-31 08:10:48


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File Size: 3,70 MB

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Novosibirsk / /

Company

Creative Commons / /

Country

Russia / /

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Facility

National Institute of Allergy / Cistrome Pipeline / SAMtools pipeline / RNA-seq pipeline / RNA-seq pipeline UGENE / Tuxedo Pipeline / ChIP-seq pipeline / /

IndustryTerm

performance computing / data processing ones / data analysis tools / desktop multiplatform open-source software package / open-source tools / Internet connectivity / pipeline tools / Internet connection / computational tools / workflow systems / command-line-based tools / wizards infrastructure / desktop tools / workflow managing systems / toweb-based tools / bioinformatics tools / web interfaces / command-line tools / web services / /

OperatingSystem

Unix / Mac OS X / Linux / Microsoft Windows / /

Organization

National Institute of Health / National Institute of Allergy and Infectious Diseases / Unipro Center for Information Technologies / office of Cyber Infrastructure and Computational Biology / /

Person

Abhishek Kumar / Gene Ontology / Mariam Qui / /

Position

python interpreter / Workflow Designer / biologist / Corresponding author / interpreter / perl interpreter / bench scientist / nagarajanv@mail.nih.gov Academic editor / UGENE Workflow Designer / technical specialist / /

ProgrammingLanguage

HTML / /

Technology

RAM / Bioinformatics / Unix / Linux / perl / operating system / HTML / operating systems / PDF / Tuxedo protocol / MDscan algorithm / DNA Chip / http / GUI / /

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http /

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