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City Ljubljana / Cambridge / / Company MIT Press / GPU / A. N. Alexandrova N. V. / Intel / IBM / / Country Slovenia / / Currency pence / / / Event Diplomatic Relations / / Facility MPI library / National Institute of Chemistry / Jožef Stefan Institute / Prentice Hall / Jozef Stefan Institute / / IndustryTerm local similarity search techniques / parallel algorithms / integer processing / parallel computing / distributed computing platforms / heterogeneous computing clusters / structural similarity search algorithm / heterogeneous systems / interconnected computing nodes / multicore computing systems / structural alignment algorithms / local similarity search capabilities / cluster computing / faster algorithms / contemporary computing platforms / structural alignment applications / computing / parallel algorithm / bioinformatics applications / / MarketIndex PDB / / OperatingSystem Ubuntu / / Organization Slovenian Research Agency / MIT / Jožef Stefan Institute / Department of Communication Systems / National Institute of Chemistry / Jozef Stefan Institute / Laboratory for Molecular Modeling / / Person M. Schroeder / L. Xie / I. N. Shindyalov / / Position Author / representative / / Technology bioinformatics / Molecular Modeling / 5520 2.26 GHz processors / Parallel-ProBiS algorithm / VPN / computational chemistry / structural alignment algorithms / operating system / existing ProBiS algorithm / operating systems / Abstract The ProBiS algorithm / ParallelProBiS algorithm / two algorithms / Ethernet / 5520 2.26 GHz processor / ProBiS algorithm / nonparallel ProBiS algorithm / structural similarity search algorithm / non-parallel ProBiS algorithm / web server / The ProBiS algorithm / Gigabit Ethernet / / URL http / SocialTag 
Parallel-ProBiS: Fast Parallel Algorithm for Local Structural Comparison of Protein Structures and Binding Sites Janez Konc,1 Matjaž Depolli,2 Roman Trobec,2 Kati Rozman,1 Dušanka Janežič1,* 1