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34 CP1 Efficient Parallel Simulation for Stochastic Simulation of Biochemical Systems on the Graphics Processing Unit The small populations of some reactant species in biological systems formed by living cells can resul
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Document Date: 2008-02-26 08:41:19


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City

Hursley / Optimization / CP3 Ratio / /

Company

NEC / O. Marques / C. Voemel / Masha Sosonkina Ames Laboratory / Advanced Computing Systems / Algebraic Systems / L-W Wang / Non-Symmetric Linear Systems / Hiroyuki Kidachi Hitachi ULSI Systems Corporation / NVIDIA / Steve Plimpton Sandia National Laboratories / Biochemical Systems / Li Li Argonne National Laboratory / IBM / Sandia National Laboratories / S. Tomov / Greg Henry Intel Corporation / Intel / Alexander V. Kobotov Intel Corp. / Erik G. Boman Sandia National Labs / Yosef G. Tirat-Gefen Castel Research Inc. / Karen D. Devine Sandia National Laboratories / Andrew M. Canning Lawrence Berkeley National Laboratory / George Fann Oak Ridge National Laboratory / Matthew G. Knepley Argonne National Laboratory / /

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United Kingdom / United States / /

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Event

Business Partnership / /

Facility

Parallel Meshing Tools James C. Phillips Beckman Institute / Computer Science University of California / Xiao-Chuan Cai University of Colorado / Electronic Engineering Tsinghua University / Science University / Electromagnetic Problems Xiao-Chuan Cai University of Colorado / PP08 Abstracts Numerical Analysis Group Delft University / Institute of Computational Mathematics / University of California / Takahiro Katagiri Information Technology Center The University / University of Georgia / Martin Berzins SCI Institute University / Andy R. Terrel University of Chicago Department / PETSc Sieve library / Carl Ollivier-Gooch University of British Columbia / Technology Beijing Institute / Per Christian Hansen Technical University of Denmark Informatics / Information Engineering University / Layne T. Watson Virginia Polytechnic Institute / Vincent C. Betro University of Tennessee / Xuefeng Li Loyola University / Randolph H. Wynne Virginia Polytechnic Institute / Siegfried Selberherr Vienna University of Technology Institute / Yeran Soukiassian Mathematics Department American University / Nassif Mathematics Department American University / University of Carabobo / Tom Henderson University / William F. Mitchell National Institute of Standards and Technology Mathematical / Laxmikant V. Kale University of Illinois / Chao Mei University of Illinois / Mathematical Modelling Technical University / University of Colorado / Sameer Kumar Beckman Institute / Rhonda D. Phillips Virginia Polytechnic Institute / The University / Robert Harrison University / Klaus Schulten University of Illinios / Computer Science University / Fudan University / Applied Mathematics University of Colorado / /

IndustryTerm

software development process / scientific applications / parallel algorithms / cluster products / much larger systems / dual-core processors / data mining algorithms / iterative algorithms / usable grid tools / efficient parallel algorithms / purpose computing / interconnection networks / parallelization algorithms / post-processing / enough processors / porous media / parallel integration algorithms / scientific computing / larger systems / heteroassociative network / post-processing module / semiconductor devices / brain-like computing / continuous-time iterative algorithm / different algorithms / satellite trajectory / level-set algorithms / particular algorithm / mesh services / application developer / nanoscience applications / nano-electronic devices / data management / online selection / parallel algorithm / large nonlinear systems / linear systems / leadership computing resources / internet explorer / large linear systems / depth imaging / generic parallel algorithms / optimization algorithm / mesh tools / inhomogeneous media / sparse matrix-vector products / static interconnection networks / classification algorithm / heterogeneous media / nonlinear systems / hybrid algorithm / communication protocols / large biomolecular systems / manufacturing / mesh technology / optimization-based smoothing algorithms / electronic device / internet / performance computing systems / biological systems / colloidal systems / multi-length-scale linear systems / attractor networks / multi-core processor / large nanoscale devices / real-world applications / lower processor / rheological and other manufacturing properties / numerical software codes / parallel processors / multicore processor / /

OperatingSystem

Solaris / Microsoft Windows / Linux / MacOS / /

Organization

Technical University of Denmark / University of Tsukuba / U.S. Department of Energy / University of Maryland / University of California / Santa Barbara / Beijing Institute of Technology / Polytechnic Institute / Cornell University / Assembly on Arbitrary Meshes PP08 Abstracts / University of Utah / George Mason University / University of Denmark Informatics / Purdue University Department of Computer Sciences / University of Georgia / DOE Iowa State University / Shared Resource Center / National Science Foundation / Zaojun Bai Department / Juan Medina Universidad de Carabobo / Maria Eleftheriou IBM Thomas J. Watson Research Center / University of Tennessee / Purdue University / Purushotham Bangalore Univ. of Alabama / University of Illinios / Charles Peck Biometaphorical Computing Research IBM T.J. Watson Research Center / University of Illinois / Virginia Tech / Ji Wei Xing School of Computer Science / Blue Gene/L James Kozloski IBM TJ Watson Research Center / Scripps Research Institute / Stig Skelboe Department / Mark S. Shephard Rensselaer Polytechnic Institute Scientific Computation Research Center / Institute of Computational Mathematics / Vienna University of Technology Institute for Microelectronics / American University of Beirut / Columbia University / Socrates Dimitriadis Brown Univeristy Department of Cognitive / F. Mitchell National Institute of Standards and Technology Mathematical and Computational Sciences Division / Andy R. Terrel University of Chicago Department / Case Western Reserve University / University of Tokyo / Delft University of Technology / Hong Li Department / Sameer Kumar Beckman Institute / Michael Wolf Univ. of Illinois / United States Army / Fudan University / UNIVERSITE DE RENNES / Ichitaro Yamazaki Department / Parallel Meshing Tools James C. Phillips Beckman Institute / Jin Xu Physics Division Argonne National Lab. / Thomas Oppe Engineer Research and Development Center Waterways Experiment Station thomas.c.oppe@erdc.usace.army.mil Sharad Gavali NASA Ames Research Center / North Carolina State University / Major Shared Resource Center / Service for Scientific CCA Applications While / Purdue University Department of Computer Science / University of Colorado / Scripps Research Institute Department of Molecular Biology / Fei Wei Department / Department of Informatics / Tsinghua University / Beijing / Department of Physics / Si Liu Department / Graduate School / Loyola University / University of California / Davis / Stanford University / Department of Computer / Robert Harrison University of Tennessee Oak Ridge National Laboratory / University of Copenhagen / University of British Columbia / University of Minnesota / School of Mathematical Science / /

Person

Lois McInnes Argonne / Linda Petzold / Fred T. Tracy / Martin Buchholz / Greer / Hans-Joachim Bungartz / Thomas J. Watson / Nathaniel Sizemore / Henry / Dave Wade-Stein / Maria Eleftheriou / David A. Case / Tim Tautges Argonne / Peter C. Doerschuk / Michael Moltenbrey / Dan Erik Petersen / John Shadid Sandia / John Johnson / Katherine Mer-Nkonga / Thomas Oppe / William F. Mitchell / William W. Dai Los Alamos / Robert E. Duke / Richard Scalettar / Hans Henrik / Siegfried Selberherr / David Goudin / Justin P. Luitjens / Michael Wolf Univ / Ross C. Walker / Martin van Gijzen / Sameer Kumar / Kevin J. Bowers / Murat Manguoglu / Jin Xu / Michel Mandallena / Charles Peck Biometaphorical / Takahiro Katagiri / Steve Clark / Takao Sakurai / Johann Cervenka / Sverker Holmgren Uppsala Universtiy / Fei Wei / Randolph H. Wynne / Gary Hennigan Sandia / Daisuke Takahashi / Hong Li / Wayne Joubert / Ekaterina Elts / Rhonda D. Phillips Virginia / Paul Mullowney / Dan Karipides / Mark S. Shephard Rensselaer / Gary Howell North / Ron O. Dror / Faisal Saied / Blake Fitch / Robert J. Hoekstra Sandia / Jean-Jacques Pesque / Norris Argonne / Gerhard Klimeck / Ahmed Sameh / Rebecca J. Hartman-Baker / Michael Galloy / Robert S. Germain / Juan Medina / Ben Haley / Kamran Kamran Departemnt / /

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Position

General / representative / Engineer Research and Development Center / high-productivity development model for general purpose computing / Professor of Scientific Computing / Boulder Student Research Assistant / Engineer Research and Development Center Waterways Experiment Statiuon / /

Product

RaPTI / PETSc Sieve / BlueGene/L / /

ProgrammingLanguage

MATLAB / Java / Python / /

ProvinceOrState

British Columbia / Utah / California / Colorado / Illinois / Tennessee / Minnesota / Alabama / New York / Georgia / /

PublishedMedium

Molecular Biology / /

RadioStation

CISL / /

Technology

parallel integration algorithms / multicore processor / 3-D / efficient parallel algorithms / cache memory / 32 / 000 processors / Java / 4096 processors / mesh technology / generic parallel algorithms / Monte Carlo algorithm / 64 processors / continuous-time iterative algorithm / melding algorithm / resulting algorithm / load balancing / BlueGene/L processors / 4 / 096 BG/L processors / optimization-based smoothing algorithms / Data Mining / Simulation / Conquer algorithm / Georgia thiab@cs.uga.edu CP1 Efficient Parallel Algorithm / parallelization algorithms / different algorithms / Parallel Processing / quantum dots / neuroscience / level-set algorithms / two communication protocols / Linux / Information Technology / developed algorithms / classification algorithm / lower processor / Optical Fiber / optimization algorithm / UNC-CHapel Hill rduke@email.unc.edu David A. Case The Scripps Research Institute case@scripps.edu Mesh technology / Geophysics / 16 processors / particular algorithm / RaPTI algorithm / hybrid algorithm / LAN / Remote Sensing / Newton-Krylov algorithm / Semiconductor Devices / key data mining algorithms / operating systems / blocking algorithm / Environmental Engineering / /

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