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Bioinformatics / Molecular modelling / Drug discovery / Protein structure / Computational chemistry / Docking / Virtual screening / DOCK / Ligand / Chemistry / Biology / Science


Ligand Pose and Orientational Sampling in Molecular Docking Ryan G. Coleman1, Michael Carchia1, Teague Sterling1, John J. Irwin2, Brian K. Shoichet1,2* 1 Department of Pharmaceutical Chemistry, University of California S
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Company

Creative Commons / Ligand / Coleman / /

Country

United States / /

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Facility

To dock / DOCK PLOS ONE / University of Toronto / University of California San Francisco / DUD-E library / In building / The Scripps Research Institute / /

IndustryTerm

chemical biology / grid-based energy approach / energy function / chemical probes / energy score / energy window / chemical libraries / computer systems / low energy / genetic algorithm / low-energy aromatic hydroxyl rotamers / low-energy rotamers / physics-based energy calculation / conformational energy / high energy conformations / conformational energy calculation / low energy rotamers / orientational matching algorithm / high-energy / grids pre-compute receptor energy potential functions / explored software / important tool / energy functions / web-based implementation / energy scoring grids / favorable electrostatic and overall energy / energy / from optimizing energy scoring grids / /

OperatingSystem

XP / /

Organization

National Institute of Health / University of California San Francisco / San Francisco / Department of Pharmaceutical Chemistry / University of Toronto / Toronto / Scripps Research Institute / Faculty of Pharmacy / /

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Position

cache controller / original author / Editor / Governor / representative / /

ProvinceOrState

California / Ontario / /

PublishedMedium

PLoS ONE / /

RadioStation

FRED / /

Technology

Alpha / chemical libraries / 2.67 GHz processor / high-throughput screening / dielectric / genetic algorithm / orientational matching algorithm / recombination / /

URL

www.plosone.org / www.nigms.nih.gov / /

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