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Biochemistry / Molecular biology / Gene expression / DNA / Nucleic acids / Base pair / Stem-loop / Nucleic acid sequence / Nucleic acid structure prediction / Biology / RNA / Genetics


Folding Kinetics of Large RNAs Michael Geis a, Christoph Flamm b, Michael T. Wolfinger b, Ivo L. Hofacker b, Martin Middendorf c, Christian Mandl g , Peter F. Stadler d,a,e,b,f , Caroline Thurner g,b,∗ a Interdisciplin
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Document Date: 2008-02-26 12:48:34


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City

Wien / Santa Fe / Vienna / Leipzig / /

Company

GA A A UC CU CA AG / CC A U C GUG GC AG / A A A C GGUU C U AG C / U C G C C G U C AG / G U C G AG / /

Country

Germany / Austria / United States / /

Facility

University of Leipzig / Santa Fe Institute / Clinical Institute of Virology / Institute of Theoretical Chemistry University / Medical University of Vienna Kindespitalgasse / /

IndustryTerm

energy barrier / energy barrier increment step / energy landscape / low energy conformations / energy landscape using e.g. / free energy / low-energy conformations / Kinetic folding algorithms / energy barriers / maximum energy / potential energy surfaces / energy values / dynamic programming algorithm / maximum energy barrier / dynamic programming algorithms / explicit solution / energy difference / minimum free energy / energy model / energy / lowest free energy / /

Organization

Department of Computer Science / University of Leipzig / Medical University of Vienna Kindespitalgasse / University of Vienna / Interdisciplinary Center for Bioinformatics / Santa Fe Institute / Clinical Institute of Virology / Fraunhofer Institut f¨ / /

Person

Christian Mandl / Ivo L. Hofacker / Peter F. Stadler / Michael Geis / Michael T. Wolfinger / Caroline Thurner / Christoph Flamm / Martin Middendorf / /

ProvinceOrState

New Mexico / /

PublishedMedium

Complex Systems / /

Technology

Bioinformatics / thermodynamics / dynamic programming algorithms / Kinwalker algorithm / gene expression / Kinetic folding algorithms / 2 Algorithm / dynamic programming algorithm / simulation / /

URL

http /

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