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Molecular biology / RNA / Helices / Nucleic acid double helix / Stem-loop / Sense / Nucleic acid thermodynamics / Transcription / Nucleic acid design / Biology / DNA / Genetics


Published online July 25, –4095 Nucleic Acids Research, 2005, Vol. 33, No. 13 doi:nar/gki721 Topological constraints in nucleic acid hybridization kinetics
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Document Date: 2010-09-08 02:56:31


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Pasadena / London / Seeman / /

Company

Oxford University Press / ColIb-P9 Inc / Bio-Rad / Integrated DNA Technologies / Biosearch Technologies / WassermanS.A. / E. and PierceN.A. / /

Country

United States / /

Currency

pence / /

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Facility

duplex T A C G T C / H1L/H2 complex / California Institute of Technology / DNA complex / American Institute of Physics Press / /

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IndustryTerm

energy levels / important conceptual tool / minimum free energy helical conformation / loop-based nearest-neighbor free energy parameters / free energy / minimum free energy helical structure / energy landscape perspective / online version / dynamic programming partition function algorithm / potential energy / Stock solutions / conceptual free energy landscape / nanotechnology applications / minimum free energy helical conformations using hybridization catalysts / free energy landscape / minimum free energy state / energy landscapes / minimum free energy helical state / calculated using loop-based nearest-neighbor free energy parameters / /

Organization

American Institute of Physics Press / California Institute of Technology / Charles Lee Powell Foundation / National Science Foundation / Caltech Center for Biological Circuit Design / Oxford University / Ralph M. Parsons Foundation / Niles A. Pierce1 / 2 / * Department of Chemical Engineering / /

Person

Andrew J. Spakowitz / Justin S. Bois / Gang Wang / /

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Position

joint First Authors The Author / temperature controller / /

Product

acetic acid / /

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North Carolina / California / /

PublishedMedium

the Nucleic Acids Research / Nucleic Acids Research / Lecture Notes in Computer Science / /

Technology

thermodynamics / hybridization / dynamic programming partition function algorithm / simulation / same protocol / recombination / DNA hybridization / gel electrophoresis / /

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