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Needleman–Wunsch algorithm
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1	Today’s Lecture • Edit graph & alignment algorithms – Smith-Waterman algorithm – Needleman-Wunsch algorithm • Local vs global Add to Reading List Source URL: bozeman.mbt.washington.edu Language: English - Date: 2018-01-26 14:03:03
2	Solution sheet Sequence Alignments and Phylogeny Bioinformatics Leipzig WS 13/14 Solution sheet Add to Reading List Source URL: www.bioinf.uni-leipzig.de Language: English - Date: 2014-01-08 11:43:46 Computational science Needleman–Wunsch algorithm UPGMA Matrix Distance matrix Sequence alignment Multiple sequence alignment Neighbor joining Computational phylogenetics Bioinformatics Science
3	A Bioinformatics Approach to 3D Shape Matching Manuele Bicego(B) , Stefano Danese, Simone Melzi, and Umberto Castellani Dipartimento di Informatica, University of Verona, Strada le Grazie 15, 37134 Verona, Italy manuele. Add to Reading List Source URL: profs.sci.univr.it Language: English - Date: 2015-06-16 09:42:08 Biology Sequence alignment Sequence analysis BLAST Smith–Waterman algorithm DNA Nucleic acid sequence Needleman–Wunsch algorithm Structural alignment Computational phylogenetics Science Bioinformatics
4	Sequence Alignment Guided By Common Motifs Described By Context Free Grammars Abdullah N. Arslan Department of Computer Science University of Vermont Burlington, VT 05405, USA Add to Reading List Source URL: www.biotconf.org Language: English - Date: 2014-05-21 17:42:43 Science Mathematics Sequence alignment Needleman–Wunsch algorithm Smith–Waterman algorithm Structural alignment Multiple sequence alignment Sequence motif Nucleic acid sequence Computational phylogenetics Bioinformatics Dynamic programming
5	BMC Bioinformatics This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. SABERTOOTH: protein structural alignment b Add to Reading List Source URL: ub.cbm.uam.es Language: English - Date: 2015-05-25 09:53:34 Computational phylogenetics Protein methods Mathematical and theoretical biology Structural alignment Protein structure Sequence alignment STING Needleman–Wunsch algorithm Protein domain Science Bioinformatics Biology
6	33 A Randomized Algorithm for Distance Matrix Calculations in Multiple Sequence Alignment* Sanguthevar Rajasekaran, Vishal Thapar, Hardik Dave, and Chun-Hsi Huang School of Computer Science and Engineering, University o Add to Reading List Source URL: www.cse.uconn.edu Language: English - Date: 2004-10-13 08:46:16 Sequence alignment Multiple sequence alignment BLAST Smith–Waterman algorithm Needleman–Wunsch algorithm T-Coffee Phylo Fast Fourier transform FASTA Computational phylogenetics Bioinformatics Science
7	PDF Document Add to Reading List Source URL: www.virtual.unal.edu.co Language: English - Date: 2013-05-16 18:26:15 Computational science Multiple sequence alignment Sequence alignment Structural alignment Sequence analysis Needleman–Wunsch algorithm BLAST Bioinformatics Computational phylogenetics Science
8	PDF Document Add to Reading List Source URL: bioconductor.org Language: English - Date: 2015-05-06 21:28:10 Computational science Sequence alignment Smith–Waterman algorithm Substitution matrix Gap penalty Needleman–Wunsch algorithm BLOSUM Point accepted mutation Alignment Bioinformatics Computational phylogenetics Science
9	How do alignment programs perform on sequencing data with varying qualities and from repetitive regions? Xiaoqing Yu1, Kishore Guda2,3, Joseph Willis4, Martina Veigl2, Zhenghe Wang5, Sanford Markowitz3, Mark D. Adams5 an Add to Reading List Source URL: www.biodatamining.org Language: English Molecular biology Computational phylogenetics Protein methods DNA sequencing Phred quality score BLAST Needleman–Wunsch algorithm Chip-sequencing Phrap Biology Science Bioinformatics
10	A Bit-Parallel, General Integer-Scoring Sequence Alignment Algorithm G A R Y B E N S O N , Y O Z E N H E R N A N D E Z, & JOSHUA LOVING BIOINFORMATICS PROGRAM Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2013-07-26 04:47:46 Biology Science Needleman–Wunsch algorithm Sequence alignment Indel Smith–Waterman algorithm Computational phylogenetics Bioinformatics Dynamic programming

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