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BLAST / Smith–Waterman algorithm / Sequence alignment / Needleman–Wunsch algorithm / FASTA / Sequence analysis / Dynamic programming / Phylo / BLOSUM / Science / Computational phylogenetics / Bioinformatics


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Document Date: 2008-08-18 02:03:10


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Company

Prentice-Hall / Celoxica Plc / Agility Plc / Cambridge University Press / Altera / Pearson / Intel / Xilinx / TimeLogic Corporation / /

Country

United States / United Kingdom / /

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Event

Man-Made Disaster / /

Facility

Ying Liu The University of Edinburgh / /

IndustryTerm

protein database search programs / software implementations / heuristic local alignment algorithm / query sequence pre-processing / equivalent desktop-based software implementation / gapped alignment algorithm / faster computing platforms / sequence alignment algorithms / dynamic programming algorithm / desktop computer systems / heuristic biological sequence alignment algorithm / biological sequence alignment algorithms / local alignment algorithm / basic processing elements / equivalent desktop software / heuristic algorithm / level application software / software implementation / purpose processors / sequence search tools / Application software / ordinary exhaustive dynamic programming algorithms / application software runs / pure software implementation / pre-processing query sequence step / application software finds / online publication / query pre-processing step / method algorithm / equivalent software implementations / /

Organization

Cambridge University / Centrino Duo / School of Electronics and Engineering / National Academy of Sciences / University of Edinburgh / US Federal Reserve / /

Person

Lipman / Molecular Biology / Khaled Benkrid / Ying Liu / /

Position

D. J. / D.J. / E. / Dollas / ’A General / /

Product

Gapped BLAST system / Gapped BLAST / DK5 SP2 suite / DK5 SP2 / /

ProgrammingLanguage

C / /

ProvinceOrState

Prince Edward Island / /

PublishedMedium

IEEE Transactions on Computers / Proceedings of the National Academy of Sciences / Nucleic Acids Research / /

Technology

heuristic algorithm / FPGA / FPGA chip / RAM / Bioinformatics / Needleman-Wunsch algorithm G. The Needleman-Wunsch algorithm / dynamic programming Smith-Waterman algorithm / two-hit method algorithm / heuristic local alignment algorithm / Affine Gap Model The Needleman-Wunsch algorithm / Biological Information Signal Processor / sequence alignment algorithms / Smith-Waterman algorithm / Gapped BLAST algorithm / gapped alignment algorithm / H. Modified Needleman-Wunsch algorithm The Needleman-Wunsch algorithm / Needleman-Wunsch algorithm / modified Needleman-Wunsch algorithm / basic BLAST algorithm / ordinary exhaustive dynamic programming algorithms / local alignment algorithm / biological sequence alignment algorithms / NeedlemanWunsch algorithm / purpose processors / Linear Gap Model The Needleman-Wunsch algorithm / heuristic biological sequence alignment algorithm / dynamic programming algorithm / BLAST algorithm / modified NeedlemanWunsch algorithm / F. The Needleman-Wunsch algorithm / /

URL

http /

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