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Laboratory techniques / Bioinformatics / Protein mass spectrometry / Peptide sequence tag / Mass spectrometry software / Proteome / Peptide / Amino acid / Neuroproteomics / Chemistry / Mass spectrometry / Proteomics


Article pubs.acs.org/jpr Moving Away from the Reference Genome: Evaluating a Peptide Sequencing Tagging Approach for Single Amino Acid Polymorphism Identifications in the Genus Populus
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Document Date: 2014-03-06 13:35:36


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File Size: 1,32 MB

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Mansfield / New York / L. A. / Cronk / Searle / Wullschleger / /

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Beausoleil S. A. / Gould / DENA / Keating S. P. / GE / Gygi S. P. / Wang L. C. / Oak Ridge National Laboratory / Pearson / Gygi S. P. A / Kohler / Cox / McClatchy / Yates N. A. / Gerber S. A. / Battelle L.L.C. / DiFazio S. P. / ASSOCIATED CONTENT / /

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United States / /

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University of Tennessee / Plant Material Two Populus / /

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search database / probabilistic network / database searching algorithms / software platform / sequence alignment software / sample processing / database search / abundant chemical modification / oxidation site / proteome informatics / peptide sequence tagging algorithms / chemical species / chemical modification / search algorithm / search algorithms / energy / database search engines / database sequencing algorithms / modification site / high energy collisional dissociation / kinetic energy / collision energy / database search algorithms / gas-phase fragmentation behavior / search amino acids / careful search space selection / error-tolerant sequence tag search / blind search / search engine / alignment algorithm / higher energy collisional dissociation / /

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A. I. / /

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U.S. Department of Energy / MIT / BioEnergy Science Center / University of Tennessee / American Chemical Society / Graduate School / United States Chemical Sciences Division / Through association / University of Tennessee / Knoxville / National Football League / §Biological Sciences Division / /

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Nat / David / Ser Val→Xle / Ser Val→Met / J. Proteome Res / Weston / Robert L. Hettich / /

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D. J. / researcher / Governor / AUTHOR INFORMATION Corresponding Author *Phone / tree physiologist / Hunter / representative / /

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Q. C. / British Columbia / South Dakota / Tennessee / S. K. / /

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Environmental Research / /

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NFL / /

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Kapp / /

Technology

genomics / proteomics / search algorithm / database search algorithms / search algorithms / Biotechnology / DirecTag16 algorithm / scoring algorithm / search engine / OpenSea alignment algorithm / single nucleotide polymorphism / using peptide sequence tagging algorithms / Peptide Sequencing / database sequencing algorithms / MyriMatch algorithm / SNP / genotype / database searching algorithms / /

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