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Phylogenetics
Results: 2585

#	Item
991	Syst. Biol. 63(1):31–54, 2014 © The Author(s[removed]Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup Add to Reading List Source URL: pryerlab.biology.duke.edu Language: English - Date: 2014-01-10 01:22:33 Science Statistics Biology Substitution model Models of DNA evolution Molecular clock Akaike information criterion Maximum parsimony Sequence alignment Computational phylogenetics Bioinformatics Phylogenetics
992	Open access, freely available online PLoS BIOLOGY DNA Barcoding: Error Rates Based on Comprehensive Sampling Add to Reading List Source URL: www.urbanbarcodeproject.org Language: English - Date: 2011-03-02 14:40:14 Science DNA barcoding Coalescent theory Astraptes fulgerator Species Phylogeography Consortium for the Barcode of Life Evolutionarily Significant Unit Molecular phylogenetics Biology Phylogenetics Genetics
993	The Effect of Differential Reproductive Success on Population Genetic Structure: Correlations of Life History With Matrilines in Humpback Whales of the Gulf of Maine H. C. Rosenbaum, M. T. Weinrich, S. A. Stoleson, J. P. Add to Reading List Source URL: www.fs.fed.us Language: English - Date: 2013-03-29 12:33:06 Genetic genealogy Recent single origin hypothesis DNA Phylogenetics Humpback whale Mitochondrial Eve Lineage Right whale Mitochondrial DNA Genetics Biology Human evolution
994	Package ‘poppr’ July 29, 2014 Type Package Title an R package for genetic analysis of populations with mixed reproduction Version[removed]Date[removed] Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-29 02:07:38 Classical genetics Population genetics Computational phylogenetics Genetic genealogy Data analysis UPGMA Zygosity Bootstrapping Allele frequency Genetics Statistics Biology
995	Sequence comparison using a relational database approach Andre Bergholz Institut fur Informatik Humboldt-Universitat zu Berlin Unter den Linden 6 D[removed]Berlin, Germany Add to Reading List Source URL: www.dbis.informatik.hu-berlin.de Language: English - Date: 2005-07-20 02:26:58 Computational science BLAST Smith–Waterman algorithm Sequence alignment Sequence analysis Nucleic acid sequence Sequence database STING DNA Bioinformatics Science Computational phylogenetics
996	Package ‘recluster’ July 2, 2014 Type Package Title Ordination methods for the analysis of beta-diversity indices. Version 2.5 Date[removed] Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-02 16:15:48 Data analysis Beta diversity Phylogenetics Alpha diversity Nestedness Phylo Hierarchical clustering Bootstrapping Diversity index Statistics Measurement of biodiversity Statistical inference
997	Linking substrate and habitat requirements of woodinhabiting fungi to their regional extinction vulnerability Add to Reading List Source URL: chaire-eec.uqar.ca Language: English - Date: 2014-02-14 15:50:58 Ecology Biodiversity Environmental science Phylogenetics Beta diversity Alpha diversity Gamma diversity Phylogenetic diversity Species sorting Biology Statistics Measurement of biodiversity
998	Gathering Sequences: BLAST PRVA_MACFU PRVA_HUMAN PRVA_GERSP PRVA_MOUSE Add to Reading List Source URL: www.tcoffee.org Language: English - Date: 2009-10-25 19:29:52 Biology Sequence alignment Multiple sequence alignment BLAST BLOSUM Clustal Homology Computational phylogenetics Bioinformatics Science
999	Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments Add to Reading List Source URL: molevol.cmima.csic.es Language: English - Date: 2008-08-20 11:05:12 Biology Sequence alignment Multiple sequence alignment T-Coffee Clustal Phylo MUSCLE MAFFT Maximum parsimony Computational phylogenetics Science Bioinformatics
1000	Sketch of the Blast Approach When comparing two sequences, the various versions of the Blast program perform some combination of the following steps. 1. “Word hits” are identified. By word we mean a contiguous segmen Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2001-09-18 09:36:52 BLAST Public domain software Computational science Smith–Waterman algorithm Position-specific scoring matrix Warren Gish Sequence alignment Science Bioinformatics Computational phylogenetics

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