Technical Note: illumina® sequencing ChIP-Seq Data Analysis ChIP-Seq is a powerful method to identify genome-wide DNA binding sites for a protein of interest. This technical note describes a simple approach to building

Source URL: dnatech.genomecenter.ucdavis.edu

FOLLOWING THE CODE With the advent of genome sequencing technologies, researchers began combing genomes for open reading frames (ORFs). To enrich for genuine protein-coding ORFs and to eliminate those random sequences th

Source URL: www.the-scientist.com

Published online 5 AprilNucleic Acids Research, 2011, Vol. 39, No. 12 e78 doi:nar/gkr172 Transcriptional regulation via TF-modifying

Source URL: www-stat.wharton.upenn.edu

• Biology
• Gene expression
• Biochemistry
• Transcription factors
• DNA
• Signal transduction
• Systems biology
• Gene regulatory network
• Protein kinase
• TRANSFAC
• ChIP-sequencing
• ENCODE

Advances and challenges in Protein-RNA: recognition, regulation and prediction Yael Mandel-Gutfreund (Technion-Israel Institute of Technology, Haifa, Israel) Gabriele Varani (University of Washington, Seattle, WA , USA)

Source URL: www.birs.ca

• Biology
• Genetics
• RNA
• Gene expression
• Biotechnology
• DNA
• Molecular biology
• RNA-binding protein
• CLIP
• ChIP-sequencing
• Non-coding RNA
• RNA splicing

Article Conformation-Dependent Epitopes Recognized by Prion Protein Antibodies Probed Using Mutational Scanning and Deep Sequencing

Source URL: www.che.udel.edu

• Biology
• Medicine
• Immunology
• Immune system
• Amyloidosis
• Genetics
• Structural proteins
• Prion
• PRNP
• Antibody
• Epitope
• Transmissible spongiform encephalopathy

Sequence Classification For Protein Analysis Sepp Hochreiter and Klaus Obermayer Technische Universit¨at Berlin To analyze the sequential data obtained from genome sequencing (DNA and the translated protein sequences),

Source URL: www.bioinf.jku.at

• Artificial neural networks
• Computational neuroscience
• Bioinformatics
• Computational biology
• Sepp Hochreiter
• Protein structure
• Long short-term memory
• Sequence alignment
• Artificial intelligence
• Protein superfamily
• Protein domain
• Threading

Microsoft Word - BIT_abstract2011F.docx

Source URL: www.igb.uci.edu

• Gene expression
• DNA
• Molecular biology
• RNA
• Protein methods
• ChIP-sequencing
• Human genome
• Chromatin
• Epigenetics
• Regulation of gene expression
• RNA-Seq
• Transcriptional regulation

1 Integrity of starting material  When performing RNA-seq, it is necessary to assess the integrity of total RNA prior to mRNA or small RNA isolation using the RNA 6000 Nano Assay.  A RNA Integrity Number (RIN) of a

Source URL: cmgm.stanford.edu

• Molecular biology
• Protein methods
• Immunologic tests
• DNA
• Biotechnology
• DNA fragmentation
• Chromatin immunoprecipitation
• RNA-Seq
• Immunoprecipitation
• Chromatin
• Sequencing
• Small RNA

P0487 Rapid Full-Length Iso-Seq cDNA sequencing of Rice mRNA to Facilitate Annotation and Identify Splice-Site Variation Dario Copetti¹ ֿ◌ ², Jianwei Zhang¹, Seunghee Lee¹, Jayson Talag¹, David Kudrna¹, Yeisoo

Source URL: www.pacb.com

• Molecular biology
• RNA-Seq
• DNA sequencing
• Sequencing
• Complementary DNA
• CDNA library
• Pacific Biosciences
• Protein isoform
• Transcriptome
• De novo transcriptome assembly

Full-length Isoform Sequencing of the Human MCF-7 Cell Line using ® PacBio Long Reads

Source URL: www.pacb.com

• Molecular biology
• Gene expression
• Pacific Biosciences
• RNA
• Genomics
• Proteins
• RNA-Seq
• Protein isoform
• Human genome
• Alternative splicing