| Document Date: 2008-03-24 12:10:00
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City Rennes / Gdansk / / Company Dell / GenBank Genbank / GPU / Intel / / Country Poland / France / / Currency USD / / / Event Man-Made Disaster / / Facility S2 store / / IndustryTerm homology search / ordered index seed algorithm / today processors / faster algorithms / protein database search programs / bank index / purpose computing / time consuming search / end algorithm / automatic processing / extension algorithm / bank / bank comparisons / famous algorithm / similarity search / search functions / Protein similarity search / input bank / search space / prototype software / Web Server Issue W540-W543 / dedicated reconfigurable hardware / Basic local alignment search tool / / OperatingSystem LINUX / / Organization US Federal Reserve / / Person J. Lipman / W. Miller / E.W. Myers / W.R. Pearson / / Position SCORIS-N exec. / BLASTN exec. / D.J. / / Product iRiver H10 Portable Audio Device / / ProgrammingLanguage ANSI C / C / / PublishedMedium Genome Research / Molecular Biology / / Technology genomics / FPGA / 2 Algorithm principles The Ordered Index Seed algorithm / ORIS algorithm / Look-up Algorithm / usual seed-based algorithms / bioinformatics / end algorithm / ANSI C / SCORIS-N algorithm / Linux / cache memory / ordered index seed algorithm / seed-based algorithm / improved algorithm / 3 Experiments The ORIS algorithm / seed-based algorithms / Comparison using ORIS algorithm / today processors / FLASH / Web Server / famous algorithm / extension algorithm / /
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Ordered Index Seed Algorithm for Intensive DNA Sequence Comparison Dominique Lavenier IRISA / CNRS Campus de Beaulieu[removed]Rennes, France [removed]