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Biology / Science / Protein methods / Molecular modelling / Lattice protein / Protein structure prediction / Root-mean-square deviation / Protein folding / Molecular dynamics / Protein structure / Chemistry / Bioinformatics


How Good Are Simplified Models for Protein Structure Prediction?
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City

Barcelona / Article / /

Company

AAAI Press / Creative Commons / Intel / Hindawi Publishing Corporation / Australia Queensland Research Laboratory / /

Country

United States / Spain / /

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Facility

Griffith University / I-TASSER pipeline / square of Euclidean / /

IndustryTerm

constraint-based local search algorithm / simplified energy function / local search / simplified energy models / search spaces / constraint-based local search system using lazy propagation / sequence culling server / statistical energy models / search guidance / constraint-based local search / greedy chain growth algorithm / lower energy values / interaction energy / energy functions / growth algorithms / energy / constraint-based local search framework / simplified energy functions / energy function / energy methods / empirical contact energy definitions / genetic algorithm / genetic algorithms / refinement algorithm / search techniques / web server / empirical energy model / guided search / energy models / hybrid local search / chain growth algorithms / minimum free energy / energy model / /

Organization

WCB / Australian Government / National Academy of Sciences / Australian Research Council / Institute for Integrated and Intelligent Systems / Federal Communications Commission / Griffith University / ICT Centre of Excellence Program / Department of Broadband / Communications and the Digital Economy / /

Person

M. A. Hakim Newton / Abdul Sattar / R. L. Dunbrack Jr. / M. J. Maher / M. T. Hoque / A. Hakim Newton / G. Wang / M. CebriĀ“an / Bhaskar Dasgupta / S. Shatabda / P. Van Hentenryck / A. Sattar / D. N. Pham / D. Nghia Pham / P. Clote / M. A. Rashid / I. Dotu / Martin Mann / /

Position

Constraint Programming Model for Protein Structures / Academic Editor / /

ProgrammingLanguage

C++ / /

PublishedMedium

Journal of Molecular Biology / Proceedings of the National Academy of Sciences / Journal of Computational Chemistry / Nucleic Acids Research / /

Technology

sampling algorithms / Bioinformatics / Broadband / antibodies / greedy chain growth algorithm / Computational Chemistry / chain growth algorithms / constraint-based local search algorithm / drug discovery / artificial intelligence / refinement algorithm / simulation / web server / /

URL

http /

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