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Web services / Cloud infrastructure / Bioinformatics / Burrows–Wheeler transform / Transforms / Apache Hadoop / FASTQ format / Suffix tree / Amazon Elastic Compute Cloud / Computing / Cloud computing / Centralized computing


Ultrafast and memory-efficient alignment of short reads to the human genome Ben Langmead, Cole Trapnell, Mihai Pop, and Steven L. Salzberg Center for Bioinformatics and Computational Biology, University of Maryland, Coll
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Document Date: 2009-02-05 21:51:40


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File Size: 1,52 MB

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City

Bowtie / Palo Alto / /

Company

Amazon / Digital Equipment Corporation / Intel / /

Currency

USD / /

Facility

College Park / University of Maryland / /

IndustryTerm

search strategies / block sorting lossless data compression algorithm / cloud computing infrastructure / large-memory server / free open source software layer / quality-aware search algorithm / simplified data processing / depth-first search / above algorithm / open source software / Web Services7 / /

Organization

Steven L. Salzberg Center for Bioinformatics and Computational Biology / University of Maryland / College Park / IEEE Computer Society / /

Person

Cole Trapnell / Ben Langmead / /

Position

Dean / /

Product

S3 / /

ProgrammingLanguage

Java / /

PublishedMedium

Genome Research / Communications of the ACM / /

Technology

above algorithm / 2 processor / RAM / Bioinformatics / Java / DNA sequencing / quality-aware search algorithm / SNP / virtual memory / 2.4 GHz AMD Opteron processor / block sorting lossless data compression algorithm / human genome / /

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http /

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