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Bioinformatics / Phylogenetics / Molecular evolution / Genetics / Ka/Ks ratio / PHYLIP / Phylogenetic tree / Sequence alignment / Maximum parsimony / Computational phylogenetics / Biology / Science


W38–W42 Nucleic Acids Research, 2007, Vol. 35, Web Server issue doi:[removed]nar/gkm224 Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics Joaquı´n Ta´rraga1,2, Ignacio Medina1, L
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Valencia / Sunderland / /

Company

Goldman / Sinauer Associates / J. (2004) Inferring Phylogenies Sinauer Associates / Wilson / Computational Molecular Evoltion Oxford University Press / Suzuki / Creative Commons / /

Country

United States / United Kingdom / /

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Facility

University of Washington / /

IndustryTerm

molecular evolutionary genetics analysis software / different tools / branch-site / parallel computing / Web Server issue W41 Figure / genetics.washington.edu/phylip/software.html / tree search option dialog / Web Server issue W39 OUTLINE OF THE PROGRAM Phylemon / utilities section / phylogenetic algorithms / integrated web framework / web interface / integrated web server / web servers / non-synonymous site / trees summarizing algorithm / online platform / Web Server issue parameters / degenerate site / post-analysis utilities / Web Server / web tools / public web server / numerical optimization algorithms / format compatible tools / synonymous site / /

OperatingSystem

GNU/Linux / Linux / Microsoft Windows / /

Organization

Bioinformatics Department / University of Washington in Seattle / University of Washington / Seattle / Oxford University / /

Person

Toni Gabaldo / Jaime Huerta / /

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Position

Author / /

ProgrammingLanguage

Java / ML / /

ProvinceOrState

South Dakota / Massachusetts / /

PublishedMedium

the Nucleic Acids Research / Nucleic Acids Research / /

Technology

Genomics / Bioinformatics / Linux / ProML algorithms / Seqboot algorithm / human genome / Functional Genomics / structural genomics / Java / http / corresponding trees summarizing algorithm / molecular evolution / numerical optimization algorithms / Web Server / /

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http /

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