Advancing Genome-Scale Phylogenomic Analysis Tandy Warnow Departments of Computer Science and Bioengineering Carl R. Woese Ins=tute for Genomic Biology The University of Illinois at Urbana-Champaign hDp://tandy.cs.ill

Source URL: tandy.cs.illinois.edu

The Mathema)cs of Es)ma)ng the Tree of Life Tandy Warnow The University of Illinois Phylogeny

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How to Write Your First Paper Tandy Warnow December 7, 2015 1

Source URL: tandy.cs.illinois.edu

CS/BioE  598AGB:   Genome  Assembly,  part  II   Tandy  Warnow   PRIMER

Source URL: tandy.cs.illinois.edu

Application for Registration (and possible Travel Award) to the 2016 Phylogenomics Symposium and Software School Registration is required, whether or not you wish to request a travel award

Source URL: tandy.cs.illinois.edu

• Computational phylogenetics
• Bioinformatics
• Biology
• Tandy Warnow
• Genetics
• Academia
• Multiple sequence alignment
• Phylogenomics
• Sequence alignment
• Email

Profile  HMMs   Tandy  Warnow   BioE/CS  598AGB   Profile  Hidden  Markov  Models   Basic  tool  in  sequence  analysis  

Source URL: tandy.cs.illinois.edu

• Bioinformatics
• Markov models

CS/BIOE  598:     Algorithmic  Computa:onal  Genomics   Tandy  Warnow   Departments  of  Bioengineering  and   Computer  Science   hFp://tandy.cs.illinois.edu  

Source URL: tandy.cs.illinois.edu

• Phylogenetics
• Biology
• Evolutionary biology
• Genetics
• Phylogenomics
• Phylogenetic tree
• Homology
• Biological databases

Parallelizing SuperFine Diogo Telmo Neves Tandy Warnow João Luís Sobral

Source URL: tandy.cs.illinois.edu

• Phylogenetics
• Biology
• Supertree
• Maximum parsimony
• Computational phylogenetics
• Polytomy
• Phylogenetic tree
• Cladistics
• Multiple sequence alignment

INFERRING OPTIMAL SPECIES TREES UNDER GENE DUPLICATION AND LOSS M. S. BAYZID, S. MIRARAB and T. WARNOW∗ Department of Computer Science, The University of Texas at Austin, Austin, Texas 78712, USA

Source URL: psb.stanford.edu

• Graph theory
• Binary trees
• Knowledge representation
• Tree
• T-tree
• B-tree
• Redblack tree
• Parallel Tree Contraction

An experimental study comparing linguistic phylogenetic reconstruction methods Franc¸ois Barbanc¸on,1 Steven N. Evans,2 Luay Nakhleh3 Don Ringe,4 , and Tandy Warnow,5,∗ 1 2

Source URL: web.engr.illinois.edu

• Phylogenetics
• Computational phylogenetics
• Biology
• Maximum parsimony
• Models of DNA evolution
• Luay Nakhleh
• Character evolution
• Edge
• Quantitative comparative linguistics