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De Bruijn graph
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1	Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly Evangelos Georganas†,‡ , Aydın Buluc¸† , Jarrod Chapman∗ Leonid Oliker† , Daniel Rokhsar∗,¶ , Katherine Yelick†,‡ Computa Add to Reading List Source URL: crd.lbl.gov - Date: 2015-03-05 16:29:10
2	How to apply de Bruijn graphs to genome assembly Add to Reading List Source URL: www.nature.com Language: English - Date: 2012-01-20 11:24:28 Graph theory Mathematics Bioinformatics NP-complete problems Computational biology DNA sequencing K-mer Velvet assembler Eulerian path Hamiltonian path Degree Seven Bridges of Knigsberg
3	CAREER: ABI: Scaling and Improving de Bruijn graph assembly C. Titus Brown Monday, July 25th, 2011 Keywords: assembly, bioinformatics, next generation sequencing, metagenomics, transcriptomics, mRNAseq. Add to Reading List Source URL: ged.msu.edu Language: English - Date: 2011-12-30 18:05:57 Biology Molecular biology Genetics Bioinformatics DNA sequencing Genomics Biotechnology De novo transcriptome assembly Sequence assembly Metagenomics RNA-Seq Whole genome sequencing
4	Finding where you are: Automata, graph endomorphisms, and de Bruijn graphs Peter J. Cameron University of St Andrews NBSAN, St Andrews, 24 April 2015 Add to Reading List Source URL: www-circa.mcs.st-andrews.ac.uk Language: English - Date: 2015-04-23 09:59:51
5	Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly Evangelos Georganas†,‡ , Aydın Buluc¸† , Jarrod Chapman∗ Leonid Oliker† , Daniel Rokhsar∗,¶ , Katherine Yelick†,‡ Computa Add to Reading List Source URL: gauss.cs.ucsb.edu Language: English - Date: 2014-09-08 14:12:54 Bioinformatics Biology Academia Computational biology Hashing K-mer Eulerian path Bloom filter Trie Parallel computing Hash table MurmurHash
6	Finding where you are: Automata, graph endomorphisms, and de Bruijn graphs Peter J. Cameron University of St Andrews NBSAN, St Andrews, 24 April 2015 Add to Reading List Source URL: www.maths.manchester.ac.uk Language: English - Date: 2015-04-27 07:07:12
7	The Enumeration of Preimages and Gardens-of-Eden in Sequential Cellular Automata Add to Reading List Source URL: www.complex-systems.com Language: English - Date: 2012-09-20 14:36:17 Mathematics Automata theory De Bruijn graph Applied mathematics
8	On the size of the Euclidean sphere of in uence graph Michael A. Soss School of Computer Science McGill University Montreal, Canada May 14, 1999 Add to Reading List Source URL: www.cccg.ca Language: English - Date: 2003-06-20 16:00:28 Planar graphs Geometric graph theory Differential topology Elementary geometry Sphere Topology De Bruijn–Erdős theorem Circle packing theorem Geometry Mathematics Graph theory
9	IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler Yu Peng, Henry C.M. Leung, S.M. Yiu, Francis Y.L. Chin Department of Computer Science, The University of Hong Kong Pokfulam Road, Hong Kong {ypeng, cmleung2, Add to Reading List Source URL: i.cs.hku.hk Language: English - Date: 2010-10-15 06:44:36 Graph theory Genomics Molecular biology DNA sequencing Velvet assembler Contig Connectivity Degree Sequence assembly Bioinformatics Mathematics Biology
10	Evolutionary Construction of de Bruijn Sequences ∗ Meltem S¨ onmez Turan National Institute of Standards and Technology, Computer Security Division Add to Reading List Source URL: eprint.iacr.org Language: English - Date: 2011-12-30 14:45:08 De Bruijn sequence Travelling salesman problem Genetic algorithm De Bruijn Mutation Bruijn Koorde Mathematics Combinatorics Graph theory