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Molecular genetics / DNA / Protein methods / Chip-sequencing / DNA binding site / Chromatin immunoprecipitation / Hypersensitive site / DNase-Seq / Chromatin / Biology / Transcription factors / Gene expression


A n a ly s i s Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
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Document Date: 2014-05-21 15:52:05


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Sherwood / Boston / Hori / Cambridge / L.A. / /

Company

Life Technologies / Millipore / Artificial Intelligence Laboratory / Agilent / Health Common Fund / BD Biosciences / Nature America Inc. / /

Country

United States / /

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Event

Product Issues / /

Facility

Columbia University / Massachusetts Institute of Technology BioMicro Center / Women’s Hospital / Massachusetts Institute of Technology / National Institute of Genetics / Harvard University / /

IndustryTerm

cloud server / biotechnology / online version / biotechnology ONLINE METHODS npg / bound site / candidate binding site / molecule treatment protocol / Protein interaction quantitation algorithm / published protocols / per-site / candidate site / animal gene regulatory networks / gene regulatory networks / cell gene networks / cell-type-specific transcriptional network / putative binding site / transcriptional network / /

Organization

Harvard Medical School / Massachusetts Institute of Technology BioMicro Center / Columbia University / National Institute of Health / National Institute of Genetics / Harvard Stem Cell Institute’s Sternlicht Director’s Fund / Harvard University / Women’s Hospital / Massachusetts Institute of Technology / Myc / US Federal Reserve / Department of Medicine / Brigham and Women / /

Person

Fw / Nat / Alexa Fluor / Min Pro / /

Position

show reporter / D.K.G. AUTHOR / forward / reporter / /

Product

vitamin A / adjacent binding / /

ProvinceOrState

Melton / Rhode Island / Massachusetts / /

PublishedMedium

PLoS ONE / /

TVShow

R.I.S. / /

Technology

alpha / 0.7 2.0 No ChIP / Bioinformatics / previously published protocols / Bmp / antibodies / H.H. et al. Refined DNase-seq protocol / biotechnology / Protein interaction quantitation algorithm / cell signaling / PIQ algorithm / c-Myc ChIP / stem cells / DNA binding / human genome / detailed protocol / artificial intelligence / DNA Chip / molecule treatment protocol / gene expression / 3g / /

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