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DNA binding site
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#	Item
1	Genome Informatics 15(2): 276–Systematic DNA-Binding Domain Classiﬁcation of Transcription Factors Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2004-12-26 23:42:01 Biology Protein domains Structural biology Transcription factors TRANSFAC DNA-binding domain DNA-binding protein BZIP domain Leucine zipper Helix-turn-helix Basic helix-loop-helix DNA binding site
2	PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny Rahul Siddharthan, Eric D Siggia, Erik van Nimwegen http://www.imsc.res.in/~rsidd/phylogibbs/ Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2015-04-22 20:15:52 Bioinformatics DNA binding site Gibbs sampling Biology
3	Genome Informatics 13: 297–Prediction of Co-Regulated Genes in Eubacterial Genomes by Phylogenetic Footprinting Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-12-19 23:03:40 Biology Genetics Gene expression DNA Bioinformatics Phylogenetic footprinting SOS box DNA binding site Transcription factor Noncoding DNA Conserved sequence
4	Research Proposal C. Titus Brown INTRODUCTION Gene regulatory networks (GRNs) encode the developmental programs of animals. By representing both Add to Reading List Source URL: ged.msu.edu Language: English - Date: 2013-12-03 10:49:39 Biology Gene expression Genetics DNA Molecular biology Bioinformatics Biological databases Gene regulatory network ENCODE Evolutionary developmental biology Gene DNA binding site
5	308 Genome Informatics 13: 308–Prediction of DNA Binding in Proteins from Composition, Sequence and Structure Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-12-19 23:03:31 Biology Transcription factors Protein structure Molecular genetics Biophysics Bioinformatics DNA-binding protein DNA binding site STING ProteinDNA interaction site predictor Residue depth
6	APPLI CATI O N N O T E Exploring gene promoters for experimentally-proven and putative transcription factor binding sites with TRANSFAC® Professional and the included Match™ tool TRANSFAC® Professional is a unique k Add to Reading List Source URL: www.gene-regulation.com Language: English - Date: 2012-06-08 10:54:19 Biology Biochemistry Transcription factors Gene expression DNA Bioinformatics Molecular biology TRANSFAC DNA binding site Biobase Vascular endothelial growth factor Promoter
7	Genome Informatics 15(2): 63–An Extension and Novel Solution to the (l,d )–Motif Challenge Problem Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2004-12-26 23:38:46 Bioinformatics Sequence motif DNA binding site Algorithm Motif Multiple sequence alignment Teiresias algorithm NP Planted motif search Multiple EM for Motif Elicitation
8	Finding DNA Regulatory Motifs with Positiondependent Models HuihaiWu University of Surrey, Guildford, United Kingdom Email: Prudence W.H. Wong, Mark X. Caddick and Chris Sibthorp Add to Reading List Source URL: cgi.csc.liv.ac.uk Language: English - Date: 2013-07-03 10:32:55 Bioinformatics Position weight matrix Sequence motif Multiple sequence alignment DNA binding site Gibbs sampling Bayesian network Sequence alignment
9	Vol. 22 no, pages e393–e401 doi:bioinformatics/btl245 BIOINFORMATICS Apples to apples: improving the performance of motif finders Add to Reading List Source URL: www.maths.usyd.edu.au Language: English - Date: 2006-08-02 16:36:22 Bioinformatics Multiple sequence alignment DNA binding site Entropy Motif Phylo Multiple EM for Motif Elicitation
10	Genome Informatics 13: 301–Building Common Patterns for Transcription Factor Binding Sites of Escherichia coli Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-12-19 23:03:33 Gene expression DNA Molecular biology Bioinformatics Transcription factors DNA binding site Regulation of gene expression Escherichia coli Gene TRANSFAC

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