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Position weight matrix
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#	Item
1	PAM matrix for BLAST algorithm Churbanov Alexander April 11,2002 Abstract In this paper we will consider math background for PAM (Point Accepted Mutation). PAM matrix is used extensively in BLAST (Basic Local Alignment S Add to Reading List Source URL: bioinfo.ict.ac.cn Language: English - Date: 2014-11-28 11:05:21 Biology Bioinformatics Genetics Computational phylogenetics Point accepted mutation Matrices Molecular biology BLAST Amino acid Position weight matrix Peptide sequence Mutation
2	© 2004 Nature Publishing Group http://www.nature.com/naturebiotechnology _computational BIOLOGY PRIMER Add to Reading List Source URL: bioinfo.ict.ac.cn Language: English - Date: 2014-11-28 11:09:46 Bioinformatics Computational phylogenetics BLOSUM Sequence alignment BLAST FASTA Homology Position weight matrix Matrix Substitution matrix Multiple sequence alignment
3	Finding DNA Regulatory Motifs with Positiondependent Models HuihaiWu University of Surrey, Guildford, United Kingdom Email: Prudence W.H. Wong, Mark X. Caddick and Chris Sibthorp Add to Reading List Source URL: cgi.csc.liv.ac.uk Language: English - Date: 2013-07-03 10:32:55 Bioinformatics Position weight matrix Sequence motif Multiple sequence alignment DNA binding site Gibbs sampling Bayesian network Sequence alignment
4	Statistical Science 2004, Vol. 19, No. 1, 188–204 DOI088342304000000107 © Institute of Mathematical Statistics, 2004 Computational Discovery of Gene Add to Reading List Source URL: www-stat.wharton.upenn.edu Language: English - Date: 2006-07-24 16:11:35 Bioinformatics Biology Multiple sequence alignment Position weight matrix DNA binding site Consensus sequence ST motif Nucleic acid sequence Sequence alignment Promoter Expectationmaximization algorithm Sequence motif
5	Genome Informatics 16(1): 59–Assessing Transcription Factor Motif Drift from Noisy Decoy Sequences Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2005-12-28 10:55:29 Biology Bioinformatics DNA binding site Position weight matrix Multiple sequence alignment Chromatin immunoprecipitation Transcription factor Sequence motif DNA-binding protein ChIP-on-chip Cis-regulatory element Promoter
6	Package ‘seqLogo’ December 1, 2014 Title Sequence logos for DNA sequence alignments Version[removed]Author Oliver Bembom Description seqLogo takes the position weight matrix of a DNA Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-12-02 13:20:13 Sequence logo Sequence motif Matrix PWM Sequence alignment Bioinformatics Science Position-specific scoring matrix
7	Analysis of Biological Networks: Transcriptional Networks - Promoter Sequence Analysis Lecturer: Roded Sharan Add to Reading List Source URL: www.cs.tau.ac.il Language: English - Date: 2007-02-26 07:56:15 Molecular biology Bioinformatics DNA Promoter TRANSFAC Position-specific scoring matrix E2F Gene Weight Biology Gene expression Transcription factors

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