Large biomolecular simulation on HPC platforms III. Addendum 1: AMBER 12 and NAMD 2.9 Hannes H. Loeffler, a Martyn D. Winn a a Computational

Source URL: www.hecbiosim.ac.uk

Large biomolecular simulation on HPC platforms III. AMBER, CHARMM, GROMACS, LAMMPS and NAMD Hannes H. Loeffler, a Martyn D. Winn a a Computational

Source URL: www.hecbiosim.ac.uk

Large biomolecular simulation on HPC platforms II. DL POLY, Gromacs, LAMMPS and NAMD Hannes H. Loeffler, a Martyn D. Winn a a Computational

Source URL: www.hecbiosim.ac.uk

Low-risk, Primary Cesarean Births in Medicaid: NAMD/AMCHP Issue Brief July 2015 EXECUTIVE SUMMARY Across the country, Medicaid programs are implementing system wide payment and delivery reforms that reward quality care a

Source URL: www.leapfroggroup.org

University of Illinois at Urbana-Champaign Beckman Institute for Advanced Science and Technology Theoretical and Computational Biophysics Group Computational Biophysics Workshop Shape-Based Coarse

Source URL: www.ks.uiuc.edu

• Computational chemistry
• Protein structure
• Molecular dynamics
• NAMD
• Crystallography
• Protein methods
• Granularity
• Force field
• STING
• Chemistry
• Science
• Molecular modelling

University of Illinois at Urbana-Champaign Luthey-Schulten Group NIH Center for Macromolecular Modeling and Bioinformatics Assembly of the h18 Pseudoknot in Escherichia coli Using Structure-Based Models

Source URL: vidar.scs.uiuc.edu

• Computational chemistry
• Molecular modelling
• RNA
• Molecular dynamics
• NAMD
• GROMACS
• Root-mean-square deviation
• Pseudoknot
• Statistics
• Science
• Chemistry

University of Illinois at Urbana-Champaign Beckman Institute for Advanced Science and Technology Theoretical and Computational Biophysics Group Computational Biophysics Workshop Stretching Deca-alanine

Source URL: www.ks.uiuc.edu

• Molecular modelling
• Molecular dynamics
• NAMD
• Simulation
• Hydrogen bond
• Visual Molecular Dynamics
• Chemistry
• Science
• Computational chemistry

NAMD User’s Guide Version CVSM. Bhandarkar, A. Bhatele, E. Bohm, R. Brunner, F. Buelens, C. Chipot, A. Dalke, S. Dixit, G. Fiorin, P. Freddolino, P. Grayson, J. Gullingsrud, A. Gursoy, D. Hardy, C. Harrison

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Simulating Conformational Fluctuations Molecular Dynamics Program NAMD

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Fashioning NAMD: A History of Risk and Reward LISA POLLACK UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN With a homemade parallel supercomputer in his backpack, Klaus Schulten waited

Source URL: www.ks.uiuc.edu