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Pairwise Algorithm
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#	Item
1	Pairwise Sequence Alignment with Gaps with GPU Thomas C. Carroll Jude-Thaddeus Ojiaku Prudence W.H. Wong Add to Reading List Source URL: cgi.csc.liv.ac.uk Language: English - Date: 2015-10-05 11:33:32 Computational phylogenetics Bioinformatics Biology Applied mathematics BLAST Sequence alignment SmithWaterman algorithm Speedup Parallel computing Dynamic programming General-purpose computing on graphics processing units Multiple sequence alignment
2	Genome Informatics 16(2): 237–A Space-Efficient Algorithm for the Constrained Pairwise Sequence Alignment Problem Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2005-12-28 06:18:56 Computational phylogenetics Mathematics Bioinformatics Applied mathematics Mathematical optimization Operations research Systems science Markov models Dynamic programming Multiple sequence alignment Sequence alignment Minimum spanning tree
3	Euclid’s Algorithm Tanya Khovanova October 25, 2010 Nothing produces such odd results as trying to get even. Class Discussion Add to Reading List Source URL: www.tanyakhovanova.com Language: English - Date: 2011-02-15 14:52:11 Euclidean algorithm Coprime Fibonacci number Divisor Algorithm Pairwise coprime Least common multiple Mathematics Number theory Greatest common divisor
4	CCCG 2010, Winnipeg MB, August 9–11, 2010 Approximate Shortest Path Algorithms for Sequences of Pairwise Disjoint Simple Polygons Xiuxia Pan, Fajie Li∗ Add to Reading List Source URL: cccg.ca Language: English - Date: 2010-07-19 10:46:18 Analysis of algorithms Computational complexity theory Time complexity Pi Algorithm Polygon Theoretical computer science Mathematics Applied mathematics
5	Pairwise Sequence Alignments Patrick Aboyoun Gentleman Lab Fred Hutchinson Cancer Research Center Seattle, WA April 16, 2015 Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2015-04-16 22:10:00 Computational science Sequence alignment Smith–Waterman algorithm Substitution matrix Gap penalty Needleman–Wunsch algorithm BLOSUM Point accepted mutation Alignment Bioinformatics Computational phylogenetics Science
6	Brute Force and Indexed Approaches to Pairwise Document Similarity Comparisons with MapReduce Jimmy Lin The iSchool, College of Information Studies, University of Maryland National Center for Biotechnology Information, U Add to Reading List Source URL: www.umiacs.umd.edu Language: English - Date: 2009-05-07 09:10:16 Distributed computing architecture MapReduce Search algorithms Apache Hadoop Algorithm Accumulator Inverted index Embarrassingly parallel Concurrent computing Computing Parallel computing
7	-6Ê Silva Fennica[removed]research articles Add to Reading List Source URL: www.silvafennica.fi Language: English - Date: 2013-05-07 04:06:02 Applied mathematics Analytic Hierarchy Process Science Pairwise comparison Simulated annealing Cost–benefit analysis Heuristic Algorithm Mathematical optimization Decision theory Operations research Mathematics
8	Bootstrapping and Normalization for Enhanced Evaluations of Pairwise Sequence Comparison RICHARD E. GREEN AND STEVEN E. BRENNER Invited Paper The exponentially growing library of known protein sequences Add to Reading List Source URL: compbio.berkeley.edu Language: English - Date: 2003-05-09 16:26:45 Biology Sequence alignment FASTA Structural alignment Smith–Waterman algorithm BLAST Structural Classification of Proteins Protein family Substitution matrix Bioinformatics Science Computational phylogenetics
9	PDF Document Add to Reading List Source URL: www.samsi.info Language: English - Date: 2012-01-18 15:03:17 Pairwise Algorithm Algorithm World3 Mathematics Science Food science Homogenization

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