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Shotgun sequencing
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1	A Workflow for the Analysis of Contigs from the Metagenomic ® Shotgun Assembly of SMRT Sequencing Data Richard J Hall1, Meredith Ashby1, Brett Bowman1, Cheryl Heiner1, Sudeep Mehrotra2, Nikoleta Juretic2, Jessica Wasser Add to Reading List Source URL: www.pacb.com - Date: 2015-11-09 02:53:00
2	Csaba Kerepesi, Dániel Bánky, Vince Grolmusz: AmphoraNet: Taxonomic Composition Analysis of Metagenomic Shotgun Sequencing Data http://pitgroup.org/amphoranet/ Add to Reading List Source URL: pitgroup.org Language: English - Date: 2014-01-08 03:45:08 Biology Microbiology Bioinformatics Bacteriology Environmental microbiology Genomics Human Microbiome Project Human microbiota AMPHORA Microbiota Metagenomics MEGAN
3	Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome using long-read sequencing Add to Reading List Source URL: www.pacb.com Language: English - Date: 2016-06-17 11:41:16 Biology Genetics Molecular biology Genomics Bioinformatics DNA sequencing Biotechnology Shotgun sequencing Contig Subtelomere Pacific Biosciences Plasmodium falciparum
4	GARNish, Newsletter for GARNet, genomic arabidopsis resource network, UK service providers for functional genomics tools. Genomic Arabidopsis Resource Network Issue 17 Add to Reading List Source URL: arabidopsis.info Language: English - Date: 2014-05-12 13:49:05 Biology Genomics Bioinformatics Molecular biology Genetic mapping Genetics DNA sequencing Shotgun sequencing Arabidopsis Contig Genome project Genome
5	Microbiome This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. VizBin - an application for reference-independent Add to Reading List Source URL: lvdmaaten.github.io Language: English - Date: 2016-07-16 15:30:43 Biology Microbiology Bioinformatics Clinical pathology Environmental microbiology Molecular biology Bacteriology Binning Metagenomics Human Microbiome Project Microbiota Shotgun sequencing
6	Workflow for processing high throughput Single Molecule Real-Time sequencing data, for analyzing the microbiome of patients undergoing fecal microbiota transplantation Add to Reading List Source URL: www.pacb.com Language: English - Date: 2016-06-29 16:14:28 Biology Molecular biology DNA sequencing Microbiology Bioinformatics Genomics Pacific Biosciences Microbiota MEGAN Human microbiota Shotgun sequencing Metagenomics
7	CS 394C Questions about Assemblers 1. What is a “read”? 2. What is meant by “3-fold coverage”? 3. What is a “DNA fragment”? 4. What is a “mate-pair”? Add to Reading List Source URL: www.cs.utexas.edu Language: English - Date: 2013-10-28 13:24:30 Biology Molecular biology DNA sequencing Bioinformatics Biochemistry Genomics Biotechnology Sequence assembly Shotgun sequencing Sequencing Hybrid genome assembly Sanger sequencing
8	Major Achievements The primary focus in my varied career has always been on doing good computation in the service of science, which has led in some odd directions: Avida, In 1993, as my freshman summer project, Add to Reading List Source URL: ged.msu.edu Language: English - Date: 2012-07-23 16:10:55 Biology Bioinformatics Genetics Genomics Molecular biology Environmental microbiology DNA sequencing Metagenomics Shotgun sequencing Sequence assembly Whole genome sequencing Viral metagenomics
9	www.nature.com/scientificdata OPEN SUBJECT CATEGORIES » Environmental microbiology Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Genomics Cyanobacteria Molecular biology Bioinformatics Environmental microbiology Prochlorococcus Photosynthetic picoplankton Synechococcus Genome Expressed sequence tag Shotgun sequencing Sequence assembly
10	AGI BUILDS ON BAC EXPERTISE AND SMRT® SEQUENCING FOR RICE AND OTHER CROP GENOMES At the University of Arizona, a leading genomics research facility benefits from decades of BACbased sequencing expertise, original studie Add to Reading List Source URL: www.pacb.com Language: English - Date: 2016-08-03 18:25:51 Genomics Molecular biology Bioinformatics Biotechnology DNA sequencing Whole genome sequencing Pacific Biosciences Single molecule real time sequencing Shotgun sequencing Genome Bacterial artificial chromosome Reference genome

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